tag:blogger.com,1999:blog-68094423910443572952024-03-12T19:36:53.230-07:00ANDS BMRI AP24 ApplicationAnonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.comBlogger10125tag:blogger.com,1999:blog-6809442391044357295.post-54151597031303487922014-05-27T22:28:00.005-07:002014-05-27T22:40:15.290-07:00<div class="MsoNormal" style="margin-bottom: 11.25pt;">
<b><span style="font-family: "Arial","sans-serif"; font-size: 22.5pt; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; mso-font-kerning: 18.0pt;">ANDS AP24 BMRI Application - Final Product Report<o:p></o:p></span></b></div>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">May 28<sup>th,</sup>
2014<o:p></o:p></span></div>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The AP24 project (Brain and Mind Research Institute Application) has reached end of development and we are
happy to announce the BMRI Application is available for the general public.<o:p></o:p></span></div>
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<b><span style="color: #333333; font-family: "Arial","sans-serif"; font-size: 22.5pt; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; mso-font-kerning: 18.0pt;">Introductory Product Information<o:p></o:p></span></b></div>
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<span style="color: #444444; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">One of the main problems in Brain and Mind Research Institute is that there
is no such a tool that can efficiently and effectively collaborate the data captured
from multiple tests. The researchers need
to collect, collate, and compile the data and the images together manually in order
to perform analysis. Another is the pre –
processing of the MRI images. In order to read the image, research needs to pre
– process the raw image from the scanner. Professor Jim Lagopoulos spends hours
and hours a week just on helping the pre- processing because he is the only person
who has the expertise to do it quickly.</span><span style="color: #666666; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></div>
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<span style="color: #444444; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">These manual processes consume significant time and effort, replacing these
by an automated process will be a huge success in the research area.</span><span style="color: #666666; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></div>
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<span style="color: #444444; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The system will improve the process efficiency by replacing the manual pre
– processing to an automated pre- processing based on the researcher’s requirement. Moreover, system integrates multiple sources of
records and presents the summery of linked records according to user’s query, giving
the user an overall view of related records. This automated functionality is previously
not existed in this research filed of BMRI the University of Sydney.</span><span style="color: #666666; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></div>
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<span style="color: #444444; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The new process and functionality that has been brought by the application
is highly welcomed by the researchers in BMRI, including:<o:p></o:p></span></div>
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<br /></div>
<ul type="disc">
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Integrate,
manage and store a diverse range of clinical research data.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Run MRI
Scan pre-process through the process<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Ingest
existing research data<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
users to manage access to research data.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Allow
user to define and queries on research data.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Provide
RIF-CS 1.4, Service, Party, Input Collection and Output Collection records
to Research Data Australia.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Meets
security standards.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Meets
minimum accessibility requirements.<o:p></o:p></span></li>
</ul>
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<h2>
Project Aim <o:p></o:p></h2>
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<span style="font-family: "Arial","sans-serif";">The aim of the
project was to integrate various (a) imaging, (b) neurological & electrophysiological
testing data and (c) clinical data for the purpose of providing a refined answer
to complex research questions that was not previously possible using the separately
existing (and expanding) data sets across the clinical research programs at BMRI
making use of brain scans. <o:p></o:p></span></div>
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<span style="font-family: "Arial","sans-serif";"><br /></span></div>
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<span style="font-family: "Arial","sans-serif";">The project provided
an integration tool for the multiple data sets and data points within those data
sets and developed an analytical tool for interrogating the data in response to
specific research questions. For example, researchers at the BMRI are trying to
establish if there is a characteristic pattern that emerges from MRI structural
imaging data and a specific electrophysiological component that predicts with some
degree of accuracy a clinical phenotype, such as depression in young people. <o:p></o:p></span></div>
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<span style="font-family: "Arial","sans-serif";">The system developed
through this project provides an integrated research data set to be expanded and
used for future research projects. An additional objective was to integrate contributions
to the data set from other clinical researchers and to make the larger data set
available through research collaborations which was achieved by linking to the National
Imaging Facility (NIF) via the DARIS application and has also enabled a University
of Sydney wide imaging platform. <o:p></o:p></span></div>
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<span style="font-family: "Arial","sans-serif";"><br /></span></div>
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<span style="font-family: "Arial","sans-serif";">The outcomes of
the project will provide data and an analysis platform for the development of information
based diagnostic and treatment response algorithms for young people with major mental
health problems like depression and psychotic disorders, as well as ageing subjects.<o:p></o:p></span></div>
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<span style="font-family: "Arial","sans-serif";"><br /></span></div>
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<span style="font-family: "Arial","sans-serif";">AP24 has provided
a software solution covering the following functionality:<o:p></o:p></span></div>
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<!--[if !supportLists]-->1.<span style="font-size: 7pt;"> </span><!--[endif]--><span style="font-family: "Arial","sans-serif";">Integrate large and sometimes disparate
data sets held in SPSS and provide a platform to enable data transformation and
analysis by authorised parties. <o:p></o:p></span></div>
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<!--[if !supportLists]-->2.<span style="font-size: 7pt;"> </span><!--[endif]--><span style="font-family: "Arial","sans-serif";">Provide an analytical tool for interrogating
the data in response to research questions (of the type discussed above).<o:p></o:p></span></div>
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<!--[if !supportLists]-->3.<span style="font-size: 7pt;"> </span><!--[endif]--><span style="font-family: "Arial","sans-serif";">In cases where a research subject is under
clinical care, and research findings may provide additional diagnostic support,
provide mechanisms for communicating findings to the clinician.<o:p></o:p></span></div>
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<h2>
Project outcomes<o:p></o:p></h2>
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<span style="font-family: "Arial","sans-serif";">Prior to this
project, researchers would manually collect, collate, and combine the data from
the three information sources i.e. MRI, Neuropsychological, and EEG data by querying
the various datasets for the specific requirements. The project has implemented
an automated system that not integrates the data in one place, it also enables queries
via metadata and attributes down to the field level to assist researchers in collecting
data for analysis.<o:p></o:p></span></div>
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<h2>
Instructional Product Information<o:p></o:p></h2>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The University
of Sydney has chosen <b>Daris</b> as the solution software. The DARIS application
utilises MediaFlux software and provides functions required by University of Sydney
researchers.<o:p></o:p></span></div>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The key functions
required that Daris will be able to produces are:<o:p></o:p></span></div>
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<ul type="disc">
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Storage
of MRI data<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Storage
of Neuropsychological data<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
uses to manage access to specific data sets<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
users to describe research data collections<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
users to query the systems research data collection<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
users to download research data<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
the visualisation of research data<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Make
available RIF-CS 1.4 metadata available for harvesting via OAI-PMH.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Enable
the creation of output collections<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> <o:p></o:p></span></li>
</ul>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Solution components are broken down
into the following:<o:p></o:p></span></div>
<ul type="disc">
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Access
control for authentication and authorization purposes.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Admin
functionality is controlled by roles based permissions. Functional permissions
management is a permissions controlled function that allows users to grant
and revoke data access and to manage user roles.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Other
function is to implement business functions. For example building form that
allows users to add and update Neuropsychological data.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Reporting
is a permissions controlled function that packages, compresses and makes datasets
available for download by authenticated users.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">File
system storage will store the pre-processed data and its extended information
like index.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Relational
database will be used for system management configuration or user management
information only.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Email
Connector is the components that send appropriate emails to application users.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The OAI
harvester makes RIF-CS 1.4 compliant metadata records .xml files public available
for harvest Research Data Australia is a RIF-CS 1.4 .xml harvester.<o:p></o:p></span></li>
</ul>
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<h2>
Getting started<o:p></o:p></h2>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Please refer to the</span><a href="https://github.com/IntersectAustralia/ap11_samifier/wiki/Deployment-guide"><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;"> </span><span style="color: windowtext; text-decoration: none; text-underline: none;"><span style="color: #0088cc; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Developers Guide</span></span></a><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> on instructions on how to download or
build the tools.<o:p></o:p></span></div>
<h2>
Documentation<o:p></o:p></h2>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">There are a number of
manual and document resources available:<o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt; margin-left: 18.75pt; margin-right: 0cm; margin-top: 0cm; mso-list: l2 level1 lfo1; tab-stops: list 36.0pt; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="color: #333333; font-family: Symbol; font-size: 10.0pt; mso-bidi-font-family: Symbol; mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Symbol; mso-fareast-language: EN-AU;">·<span style="font-family: 'Times New Roman'; font-size: 7pt; line-height: normal;">
</span></span><!--[endif]--><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:users:working_with"><span style="color: #0088cc; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">User Manual</span></a><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt; margin-left: 18.75pt; margin-right: 0cm; margin-top: 0cm; mso-list: l2 level1 lfo1; tab-stops: list 36.0pt; text-indent: -18.0pt;">
<!--[if !supportLists]--><a href="https://www.blogger.com/blogger.g?blogID=6809442391044357295" imageanchor="1" style="clear: right; float: right; margin-bottom: 1em; margin-left: 1em;"></a><span style="color: #333333; font-family: Symbol; font-size: 10.0pt; mso-bidi-font-family: Symbol; mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Symbol; mso-fareast-language: EN-AU;">·<span style="font-family: 'Times New Roman'; font-size: 7pt; line-height: normal;">
</span></span><!--[endif]--><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Github repositories: </span><span style="color: #333333; font-family: Arial, sans-serif; line-height: 13.5pt;">Daris </span><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:users:working_with" style="line-height: 13.5pt;"><span style="color: #0088cc; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Wiki Home Page</span></a></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt; margin-left: 18.75pt; margin-right: 0cm; margin-top: 0cm; mso-list: l2 level1 lfo1; tab-stops: list 36.0pt; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="color: #333333; font-family: Symbol; font-size: 10.0pt; mso-bidi-font-family: Symbol; mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Symbol; mso-fareast-language: EN-AU;">·<span style="font-family: 'Times New Roman'; font-size: 7pt; line-height: normal;">
</span></span><!--[endif]--><a href="http://andsap24.blogspot.com.au/2014/05/ands-ap24-bmri-application-user.html"><span style="color: #0088cc; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Blog</span></a><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt; margin-left: 18.75pt; margin-right: 0cm; margin-top: 0cm; mso-list: l2 level1 lfo1; tab-stops: list 36.0pt; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="color: #333333; font-family: Symbol; font-size: 10.0pt; mso-bidi-font-family: Symbol; mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Symbol; mso-fareast-language: EN-AU;">·<span style="font-family: 'Times New Roman'; font-size: 7pt; line-height: normal;">
</span></span><!--[endif]--><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Technical documentation:<o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt; margin-left: 18.75pt; margin-right: 0cm; margin-top: 0cm;">
<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">– </span><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:admin"><span style="color: #0088cc; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Developers Guide</span></a><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">- includes links to deployment and developer guides</span></div>
<h2>
Overview diagram<o:p></o:p></h2>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt;">
<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The following diagram outlines where the different tools fit within the research paths.<o:p></o:p></span></div>
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<br /></div>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-language: EN-AU; mso-no-proof: yes;"><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600"
o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f"
stroked="f">
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alt="https://3.bp.blogspot.com/-nlUAy0r7oLk/URmARxtmGwI/AAAAAAAAAAk/QFG-_UTB-ew/s640/Capture.PNG"
style='width:451.5pt;height:283.5pt;visibility:visible;mso-wrap-style:square'>
<v:imagedata src="file:///C:\Users\MITHRA~1\AppData\Local\Temp\msohtmlclip1\01\clip_image001.jpg"
o:title="proxy?url=http%3A%2F%2F3.bp.blogspot.com%2F-nlUAy0r7oLk%2FURmARxtmGwI%2FAAAAAAAAAAk%2FQFG-_UTB-ew%2Fs640%2FCapture"/>
</v:shape><![endif]--><!--[if !vml]--><!--[endif]--></span><span style="color: #333333; font-family: "Arial","sans-serif"; font-size: 10.0pt; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt;">
<div class="separator" style="clear: both; text-align: center;">
<a href="http://4.bp.blogspot.com/-kgeTZl9aBeA/U4V2mOBisJI/AAAAAAAAAAg/-n9r9FZEU_E/s1600/ANDS+BMRI.jpg" imageanchor="1" style="margin-left: 1em; margin-right: 1em;"><img border="0" src="http://4.bp.blogspot.com/-kgeTZl9aBeA/U4V2mOBisJI/AAAAAAAAAAg/-n9r9FZEU_E/s1600/ANDS+BMRI.jpg" height="401" width="640" /></a></div>
<br />
<br />
<br /></div>
<div class="separator" style="clear: both; text-align: center;">
</div>
<h2>
Product re-usability information<o:p></o:p></h2>
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<a href="https://www.blogger.com/blogger.g?blogID=6809442391044357295" imageanchor="1" style="clear: right; float: right; margin-bottom: 1em; margin-left: 1em;"></a><span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; color: #444444; font-family: Arial, sans-serif;">Imaging and clinical testing is not limited to neuroscience
and mental health research, but extends to the University's research priority areas
of cardiovascular disease, diabetes and obesity clinical research. As such the system
will be developed to be disease independent and re-deployable for other systems
(this will include the University of Sydney Charles Perkins Centre (formerly Centre for Obesity, Disease and Cardiovascular Disease
(CODCD) or other research programs as required) <span class="apple-converted-space"> <o:p></o:p></span></span></div>
<div class="MsoNormal" style="background: white; line-height: 16.0pt; margin-bottom: .0001pt; margin-bottom: 0cm; mso-outline-level: 1;">
<br /></div>
<div class="MsoNormal" style="background: white; line-height: 16.0pt; margin-bottom: .0001pt; margin-bottom: 0cm; mso-outline-level: 1;">
<span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; color: #444444; font-family: Arial, sans-serif;">The system has been designed to be able to be redeployed
to other sites outside the University of Sydney. The source code is documented and
packaged within</span><span style="font-family: "Arial","sans-serif";"> </span><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris"><span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; font-family: Arial, sans-serif;">http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris</span></a><span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; color: #444444; font-family: Arial, sans-serif;"> , enabling
download and installation elsewhere. <o:p></o:p></span></div>
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<br /></div>
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<span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; color: #444444; font-family: Arial, sans-serif;">The custom code that relates to the AP24 BMRI
Application is code shared by a number of other institutions and has been
sponsored by the Australian National Data Service (ANDS) </span><a href="http://ands.org.au/"><span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; font-family: Arial, sans-serif;">http://ands.org.au/</span></a><span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; color: #444444; font-family: Arial, sans-serif;"> <o:p></o:p></span></div>
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<br /></div>
<div class="MsoNormal" style="background: white; line-height: 16.0pt; margin-bottom: .0001pt; margin-bottom: 0cm; mso-outline-level: 1;">
<span style="background-attachment: initial; background-clip: initial; background-image: initial; background-origin: initial; background-position: initial; background-repeat: initial; background-size: initial; color: #444444; font-family: Arial, sans-serif;">During the project we have communicated our developments
and progress with other Universities with a view gauging interest in redeployment
and collaboration e.g. ANDS Distribution list and other meetings.<o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 27.0pt; margin-bottom: 11.25pt; mso-outline-level: 1;">
<br /></div>
<h2>
Contextual Product Information<o:p></o:p></h2>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">All code is licensed
under the GNU GPL v3 license - see LICENSE.txt in each code repository for license
text. Documentation (contained in the Github wiki) is licensed under Creative Commons
Attribution-Share Alike<o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt;">
<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Due to the extensive
testing by the research stakeholders, the software is now robust, mature and fit
for purpose. The ongoing maintenance of the software may occur in a number of ways,
as appropriate:<o:p></o:p></span></div>
<ul type="disc">
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Daris
Software support is provided by the DARIS team under </span><span class="MsoHyperlink"><span style="font-family: "Arial","sans-serif";">http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:about </span></span><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">MediaFlux
support is provided by Arcitecta<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The team
at the BMRI and the University of Sydney may continue to enhance the software<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Further
enhancements and fixes may be done by the DARIS team or Arcitecta, under the
support and maintenance agreement between the University of Sydney and Arcitecta.
The sustainability of the product has been considered throughout the project
and the software has been designed to maximise future maintainability:<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The software
has an extensive suite of automated unit tests that clearly describe the expected
behaviour of the code.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">This
is augmented by a suite of integration tests created by the research stakeholders.<o:p></o:p></span></li>
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The code
is open source so that other groups can contribute code back to the project.<o:p></o:p></span></li>
</ul>
<div class="MsoListParagraph">
<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The system has extensive documentation to explain the design and modules
of the system and can be found at </span><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris"><span style="font-family: "Arial","sans-serif";">http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris</span></a><i><span style="font-family: "Arial","sans-serif";"><o:p></o:p></span></i></div>
<ul type="disc">
<li class="MsoNormal" style="background: white; color: #333333; line-height: 13.5pt; mso-list: l7 level1 lfo4; mso-margin-bottom-alt: auto; mso-margin-top-alt: auto; tab-stops: list 36.0pt;"><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> </span></li>
</ul>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Posted by
Neal Anderson May 14th, 2014<o:p></o:p></span></div>
<br />
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<!-- Blogger automated replacement: "https://images-blogger-opensocial.googleusercontent.com/gadgets/proxy?url=http%3A%2F%2F3.bp.blogspot.com%2F-nlUAy0r7oLk%2FURmARxtmGwI%2FAAAAAAAAAAk%2FQFG-_UTB-ew%2Fs640%2FCapture.PNG&container=blogger&gadget=a&rewriteMime=image%2F*" with "https://3.bp.blogspot.com/-nlUAy0r7oLk/URmARxtmGwI/AAAAAAAAAAk/QFG-_UTB-ew/s640/Capture.PNG" -->Anonymoushttp://www.blogger.com/profile/17933109672510100579noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-67298232579860562372014-05-27T22:25:00.003-07:002014-05-27T22:26:10.894-07:00<div class="MsoNormal">
<span style="font-family: "Arial","sans-serif";">ANDS AP24
BMRI Application – User Testing Report<o:p></o:p></span></div>
<div class="MsoNormal" style="margin-bottom: 11.25pt;">
<b><span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; mso-font-kerning: 18.0pt;">User
Testing Report<o:p></o:p></span></b></div>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">May 14th,
2014<o:p></o:p></span></div>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">User Testing has
been completed on the AP24 application. Our user testing was completed by Associate
Professor Jim Lagopoulos, Dr Daniel Hermens, and Django White, who have
extensive experience in Neuroimaging (MRI), Neurophysiology, and Psychology, and
are part of the Brain and Mind Research Institute at the University of Sydney. <o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt;">
<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The team used
realistic data (in terms of content and size) for the testing of each data type
individually and as data linkages, and their feedback was invaluable in helping
produce a high quality solution. Read on for more info about their findings.<o:p></o:p></span></div>
<div class="MsoNormal" style="background: white; line-height: 27.0pt; margin-bottom: .0001pt; margin-bottom: 0cm; mso-outline-level: 2;">
<b><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The Application<o:p></o:p></span></b></div>
<div class="MsoNormal" style="background: white; line-height: 13.5pt; margin-bottom: 6.75pt;">
<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">An overview of the
application can be found on our wiki at </span><span style="font-family: "Arial","sans-serif";"><a href="http://andsap24.blogspot.com.au/"><span style="color: #0088cc; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Application Description</span></a></span><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> and at the </span><span style="font-family: "Arial","sans-serif";"><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:about"><span style="color: #0088cc; text-decoration: none; text-underline: none;">Wiki - About</span></a></span><span style="color: #0088cc; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> .<o:p></o:p></span></div>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Source code can be
found at:<o:p></o:p></span></div>
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<span style="font-family: "Arial","sans-serif";"><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:downloads"><span style="color: #0088cc; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Daris Source Code</span></a></span><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> - this is the webapp that’s
used to record experimental details and provide the feed to RDA.<o:p></o:p></span></div>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">We also have
a </span><span style="font-family: "Arial","sans-serif";"><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:users:working_with"><span style="color: #0088cc; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">User Manual</span></a></span><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">, and </span><span style="font-family: "Arial","sans-serif";"><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:admin"><span style="color: #0088cc; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Developers Guide</span></a></span><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">. Check out the </span><span style="font-family: "Arial","sans-serif";"><a href="http://nsp.nectar.org.au/wiki-its-r/doku.php?id=data_management:daris:users:working_with"><span style="color: #0088cc; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU; text-decoration: none; text-underline: none;">Wiki Home Page</span></a></span><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> for further useful guides and
documents.<o:p></o:p></span></div>
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<b><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Testing<o:p></o:p></span></b></div>
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<span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Justin Chang has
written a comprehensive test strategy documents that can be found at: </span><span style="font-family: "Arial","sans-serif";"><a href="http://andsap24.blogspot.com.au/2014/05/ands-ap24-bmri-application-user.html">ANDS
AP24 BMRI Application Test Strategy</a></span><span style="color: #333333; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"> <o:p></o:p></span></div>
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<br /></div>
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<span style="color: #404040; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Associate Professor
Jim Lagopoulos from BMRI said “The application will provide an environment for
integrated research data sets that can be expanded and used for future research
projects. The application will also allow the integration of data set from other
clinical researchers and makes the larger data set available through research
collaborations which was achieved by linking to the National Imaging Facility
(NIF) and has also enabled a University of Sydney wide imaging platform.”</span><span style="font-family: Arial, sans-serif;"><o:p></o:p></span></div>
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<br /></div>
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<span style="color: #404040; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">On top of the data
integration and analysis, the application will also provide a platform for the
development of information based diagnostic and treatment response algorithms
for young people with major mental health problems like depression and psychotic
disorders.</span><span style="font-family: Arial, sans-serif;"><o:p></o:p></span></div>
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<span style="color: #404040; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;"><br />
BMRI Research Fellow Daniel Hermens says “The application will improve the
process efficiency by replacing the manual pre – processing to an automated
pre- processing based on the researcher’s requirement. Moreover, system
integrates multiple sources of records and presents the summery of linked
records according to user’s query, giving the user an overall view of related
records. This automated functionality is previously not existed in this
research field of BMRI the University of Sydney.”</span><span style="font-family: Arial, sans-serif;"><o:p></o:p></span></div>
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<br /></div>
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<span style="color: #404040; font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">The Brain and Mind
Data Linkage application will be one of those tools that facilitate researchers
understanding of variations in the brain’s structure, function and
neurochemistry and consequently make a real impact on the way mental illnesses
are diagnosed, treated and prevented.</span><span style="font-family: Arial, sans-serif;"><o:p></o:p></span></div>
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<br /></div>
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<span style="font-family: "Arial","sans-serif"; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Posted by
Neal Anderson May 14th, 2014<o:p></o:p></span></div>
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Anonymoushttp://www.blogger.com/profile/17933109672510100579noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-23914748362769070002014-05-27T20:55:00.001-07:002014-05-27T22:26:01.661-07:00<br />
<div class="MsoNormal">
<b><span style="color: #404040; font-size: 22.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">New analytical tool speeds up research on youth mental illness<o:p></o:p></span></span></b></div>
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<b><span style="color: #404040; font-size: 22.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></b></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">Mental illness is the number one health
issue facing young Australians aged 12 to 15, affecting 26 percent of young
Australian in any year. Mental illness may lead to depression, psychosis,
alcohol and other drug issues and self-harm. Mental illness developed during adolescence
may stay with a person for life if the person doesn’t get help and the right
treatment. <o:p></o:p></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">In partnership with Headspace Services
(youth mental health </span></span><u><span style="color: #0070c0; font-size: 12.0pt; line-height: 107%;"><a href="http://www.headspace.org.au/"><span style="color: #0070c0;"><span style="font-family: Arial, Helvetica, sans-serif;">http://www.headspace.org.au</span></span></a></span></u><span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">), researchers from the Brain and Mind Research Institute
(BMRI) have set up the Healthy Brain Ageing program. This brings together
patients, support groups and front-line carers with scientists and clinicians
working in neurosciences and brain research to provide hope for those affected. </span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">A part of this research program involves collection, collating and analysis of dispersed
clinic data, 3D MRI imaging and neurological & electrophysiological testing
data sets for the purpose of providing a refined answer to complex research
questions. <o:p></o:p></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">This automation of data linkages was not previously possible using
the separately existing (and expanding) data sets making use of brain scans across
the clinical research programs at BMRI. Collecting and collating data are time
consuming. For example, in order to read the MRI image, researchers need to pre-process
the raw MRI image from the scanner. Professor Jim Lagopoulos spends hours and
hours a week just on doing the pre- processing because he is the only person
who has the expertise to do it quickly.<o:p></o:p></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">A project “Brain and Mind Data Linkage" led by the BMRI and funded by the</span> <span style="font-family: Arial, Helvetica, sans-serif;"><a href="http://www.ands.org.au/support/support.html"><span style="color: #404040; mso-themecolor: text1; mso-themetint: 191; text-decoration: none; text-underline: none;">Australian National Data Service</span></a> is changing that. The project developed an integration tool for
the multiple data sets and data points within those data sets, and an
analytical tool for interrogating the data in response to specific research
questions. For example, researchers at the BMRI are trying to establish if
there is a characteristic pattern that emerges from MRI structural imaging data
and a specific electrophysiological component that predicts with some degree of
accuracy a clinical phenotype, such as depression in young people. <o:p></o:p></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">Associate Professor Jim Lagopoulos from
BMRI said “The application will provide an environment for integrated research data
sets that can be expanded and used for future research projects. The
application will also allow the integration of data set from other clinical
researchers and makes the larger data set available through research
collaborations which was achieved by linking to the National Imaging Facility
(NIF) and has also enabled a University of Sydney wide imaging platform.”<o:p></o:p></span></span></div>
<div class="MsoNormal">
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="MsoNormal">
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">On top of the data integration and
analysis, the application will also provide a platform for the development of
information based diagnostic and treatment response algorithms for young people
with major mental health problems like depression and psychotic disorders.</span></span><br />
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span>
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">BMRI </span></span><span style="color: #404040; font-family: Arial, Helvetica, sans-serif; font-size: 12pt; line-height: 107%;">Research Fellow Daniel Hermens says “The application will improve the process
efficiency by replacing the manual pre – processing to an automated pre-
processing based on the researcher’s requirement. Moreover, system integrates multiple sources
of records and presents the summery of linked records according to user’s
query, giving the user an overall view of related records. This automated
functionality is previously not existed in this research field of BMRI the
University of Sydney.”</span></div>
<div class="MsoNormal">
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="MsoNormal">
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">The Brain and Mind Data Linkage application will be one of those
tools that facilitate researchers understanding of variations in the brain’s
structure, function and neurochemistry and consequently make a real impact on
the way mental illnesses are diagnosed, treated and prevented.<o:p></o:p></span></span><br />
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">The BMRI invites researchers to
consider the possibilities of using AP24 for their own research projects.
Associate Professor Jim Lagopoulos and BMRI Research Fellow Daniel Hermens, who
helped develop AP24, say the application is not limited to clinical research, and
can benefit other disciplines.<o:p></o:p></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
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<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;">This project was supported by the
Australian National Data Service (ANDS). ANDS is supported by the Australian
Government through the National Collaborative Research Infrastructure Strategy
Program and the Education Investment Fund (EIF) Super Science Initiative.</span><o:p></o:p></span><br />
<span style="color: #404040; font-size: 12.0pt; line-height: 107%; mso-themecolor: text1; mso-themetint: 191;"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="MsoNormal" style="line-height: 150%; margin-bottom: 11.0pt; text-align: justify;">
<a href="http://andsap24.blogspot.com.au/" style="line-height: 150%;"><b style="line-height: 150%;"><span style="color: #1a89f9; font-size: 12.0pt; line-height: 150%; mso-themecolor: hyperlink; mso-themetint: 191;">Find out more</span></b><span style="color: #1a89f9; font-size: 12pt; line-height: 150%;">.</span></a><br />
<br />
<span style="background-color: white; color: #666666; font-family: Helvetica, sans-serif; font-size: 13px; line-height: 18px; text-align: start;">Posted by Neal Anderson May 28th, 2014</span></div>
Anonymoushttp://www.blogger.com/profile/17933109672510100579noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-8436088530664519372014-05-13T21:29:00.003-07:002014-05-27T22:21:48.875-07:00<h2>
<span style="font-family: Arial, Helvetica, sans-serif;">ANDS AP24 BMRI Application - User Acceptance Testing (UAT) Strategy</span></h2>
<span style="font-family: Arial, Helvetica, sans-serif;"><br /></span>
<br />
<h3>
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US">1.<span style="font-size: 7pt;"> </span></span><!--[endif]--><span lang="EN-US">Background</span></span></h3>
<div class="RedmineHeading02">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308637"></a></span></div>
<div class="MsoNormal" style="line-height: 115%; margin-bottom: .0001pt; margin-bottom: 0cm;">
<span style="font-family: Arial, Helvetica, sans-serif;">Mental health and Neuroscience research programs associated with the
University of Sydney headspace Services (youth mental health
http://www.headspace.org.au), and the Healthy Brain Ageing programs are
undertaken at the Brain and Mind Research Institute. Clients of the headspace
program are offered the option of participating in research studies, such as
those examining the diagnosis and treatment for major health problems like depression
and psychosis. Subjects for the Healthy Brain Ageing program are recruited
through clinician referrals and direct applications. </span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><br /></span>
<span style="font-family: Arial, Helvetica, sans-serif;">A number of these research
studies involve health condition improvement programs (cognitive training,
exercise, art, etc.). Research subjects from both studies are routinely scanned
in a 3T MRI scanner and undergo at least a standard battery of
neuropsychological (e.g.<u> </u><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;">Cambridge</span></a><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;"> </span></a><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;">Neuropsychological</span></a><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;"> </span></a><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;">Test</span></a><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;"> </span></a><span style="color: #000099;">Automated</span><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;"> </span></a><a href="http://en.wikipedia.org/wiki/Cambridge_Neuropsychological_Test_Automated_Battery"><span style="color: #000099;">Battery</span></a> - CANTAB), and
electrophysiological testing (e.g.
Mismatch negativity, Auditory
discrimination task, Emotional discrimination task, etc.). The data obtained from the brain scans and
the neuropsychological and electrophysiological tests generates the research
projects’ raw data. <br />
<br />
This raw data is enriched by contextual information critical for use and
reuse. Research subjects themselves are
contextualised by clinical data of essential value to the researcher. Although existing tools support
characterisation, management and sharing of scans and test results, there
remains an important and unmet need for tools enabling the application and
management of persistent links relating research data, contextual data and
clinical data (de-identified in the case of human subjects).</span><br />
<span style="font-family: Arial, Helvetica, sans-serif;"><br /></span>
<span style="font-family: Arial, Helvetica, sans-serif;">Integration of
these managed data types which would enable new types of statistical analyses
(e.g. correlation, regression analysis) to be run across the combined research
scans and clinical records (such as the case of comparing a research brain scan
and the results of a clinical cognitive test).</span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></div>
<div class="MsoNormal" style="line-height: 115%; margin-bottom: .0001pt; margin-bottom: 0cm;">
<span style="font-family: Arial, Helvetica, sans-serif;">Integration would also be of
direct value to clinicians caring for patients who are also research
subjects. Research findings would be
returned to referring clinicians, providing additional diagnostic support.<o:p></o:p></span></div>
<h3 style="margin-left: 0cm; mso-list: l1 level1 lfo1;">
<span style="font-family: Arial, Helvetica, sans-serif;">2.<span style="font-size: 7pt; font-weight: normal;"> </span><!--[endif]-->People involved in the testing</span></h3>
<h1 style="margin-left: 0cm; mso-list: l1 level1 lfo1;">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308638"></a><o:p></o:p></span></h1>
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<td style="background: #E6E6E6; border: solid windowtext 1.0pt; height: 9.85pt; mso-border-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 131.75pt;" valign="top" width="176"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
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<span style="font-family: Arial, Helvetica, sans-serif;">Roles to be tested<o:p></o:p></span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;">System<o:p></o:p></span></div>
</td>
<td style="background: #E6E6E6; border-left: none; border: solid windowtext 1.0pt; height: 9.85pt; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 174.95pt;" valign="top" width="233"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">Browser<o:p></o:p></span></div>
</td>
</tr>
<tr>
<td style="border-top: none; border: solid windowtext 1.0pt; mso-border-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 131.75pt;" valign="top" width="176"><div class="MsoListParagraphCxSpFirst" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Associate Professor Jim Lagopoulos<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Dr Daniel Hermens<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Justin Chang <o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->John Twyman<b><o:p></o:p></b></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Michael Homsey<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpLast" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Dr Will Ryder<b><o:p></o:p></b></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 70.8pt;" valign="top" width="94"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">project-administrator<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 53.15pt;" valign="top" width="71"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">DaRIS<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 174.95pt;" valign="top" width="233"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">Google Chrome
22.x, IE 8.0, Firefox 12.x<o:p></o:p></span></div>
</td>
</tr>
<tr>
<td style="border-top: none; border: solid windowtext 1.0pt; mso-border-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 131.75pt;" valign="top" width="176"><div class="MsoListParagraphCxSpFirst" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Associate Professor Jim Lagopoulos<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Dr Daniel Hermens<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Justin Chang <o:p></o:p></span></div>
<div class="MsoListParagraphCxSpLast" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->John Twyman<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 70.8pt;" valign="top" width="94"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">subject-administrator<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 53.15pt;" valign="top" width="71"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">DaRIS<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 174.95pt;" valign="top" width="233"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">Google Chrome
22.x, IE 8.0, Firefox 12.x<o:p></o:p></span></div>
</td>
</tr>
<tr>
<td style="border-top: none; border: solid windowtext 1.0pt; mso-border-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 131.75pt;" valign="top" width="176"><div class="MsoListParagraphCxSpFirst" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Associate Professor Jim Lagopoulos<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Dr Daniel Hermens<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Justin Chang <o:p></o:p></span></div>
<div class="MsoListParagraphCxSpLast" style="margin-bottom: 3.0pt; margin-left: 18.0pt; margin-right: 0cm; margin-top: 3.0pt; mso-add-space: auto; mso-list: l5 level1 lfo7; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->John Twyman<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 70.8pt;" valign="top" width="94"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">member<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 53.15pt;" valign="top" width="71"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">DaRIS<o:p></o:p></span></div>
</td>
<td style="border-bottom: solid windowtext 1.0pt; border-left: none; border-right: solid windowtext 1.0pt; border-top: none; mso-border-alt: solid windowtext .5pt; mso-border-left-alt: solid windowtext .5pt; mso-border-top-alt: solid windowtext .5pt; padding: 0cm 5.4pt 0cm 5.4pt; width: 174.95pt;" valign="top" width="233"><div class="MsoNormal" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<br /></div>
</td>
</tr>
</tbody></table>
<div class="MsoNormal">
<br /></div>
<h3 style="margin-left: 0cm; mso-list: l1 level1 lfo1;">
<span style="font-family: Arial, Helvetica, sans-serif;">3<span style="font-size: 7pt; font-weight: normal;">
</span><!--[endif]-->Test Environment</span></h3>
<div class="RedmineHeading02">
<h3>
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US">3.1<span style="font-size: 7pt;">
</span></span><!--[endif]--><span lang="EN-US">People involved in the testing
General Approach</span></span></h3>
</div>
<div class="MsoNormal">
<span lang="EN-US"><span style="font-family: Arial, Helvetica, sans-serif;">The general approach for acceptance testing the ANDS AP24 BMRI Application is as follows:<o:p></o:p></span></span></div>
<div class="MsoListParagraphCxSpFirst" style="mso-list: l2 level1 lfo2; text-indent: -18.0pt;">
</div>
<ul>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">Architecta (vendor) are responsible for programmer unit testing;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">ICT project team are responsible for DaRIS for configuration testing;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">BMRI researchers, ICT project team, ICT Capability Solutions team for
end user functional testing;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">Programmer unit testing will be hands-on and automated as per Architecta
processes;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">End user functional testing will be hands-on;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">Test results will be documented by the respective teams;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">Test results will be collated by ANDS Ap24 project team;</span></span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US" style="text-indent: -18pt;"><span style="font-size: 7pt;"> </span></span><span lang="EN-US" style="text-indent: -18pt;">Testing sign-off is a responsibility of the Business Owners, Brain and Mind Research Institute (Michael Milne).</span></span></li>
</ul>
<!--[if !supportLists]--><br />
<div class="MsoListParagraphCxSpLast" style="mso-list: l2 level1 lfo2; text-indent: -18.0pt;">
<span lang="EN-US"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">Business
representatives who will participate in the UAT process will be required to
prepare a set of test scenarios (to assist the business representatives a draft
set of test scenarios has been written by the project team) that they will
execute for each of the applications that they will test. These could be as
simple as screen dumps of individual business processes or individual steps for
each process requiring testing. These will be sent to the Test Manager prior to
the UAT date for review and compilation. <o:p></o:p></span></span><br />
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">There will
be two test cycles for each project phase. The intention is that during the
first cycle, all identified test scenarios will be executed. The second cycle
allows for re-test of failed scenarios and some regression testing of the
functions the new system changes will have an impact on.<o:p></o:p></span></span><br />
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">UAT will
require the identification and creation of test data. The project team and the
business representatives prior to test execution will perform this task
jointly.<o:p></o:p></span></span></div>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">The project
team will provide user education to all participating testers prior to the
commencement of the UAT. Such education is not a formal training session, but
specifically designed for the execution of the UAT. It covers an overview of
the new solution, usage of the new system, test methodology, incident
management and technical support for UAT.<o:p></o:p></span></span><br />
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<h3>
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308642"></a><a href="https://www.blogger.com/null" name="_Toc212082328"></a><!--[if !supportLists]-->3.1.1<span style="font-size: 7pt; font-weight: normal;">
</span><!--[endif]-->User Acceptance Test Environment<o:p></o:p></span></h3>
<div class="Normal1">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-GB">UAT will
take place </span><span lang="EN-GB">onsite at </span><span lang="EN-GB">University of Sydney</span><span lang="EN-GB">. The UAT Testing
will be run on the Universities test bed against a full replica of the
production database to ensure real world scenarios, data and compatibility.<o:p></o:p></span></span></div>
<h2 style="margin: 12pt 0cm 12pt 28.9pt; text-indent: -28.9pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308643"></a><a href="https://www.blogger.com/null" name="_Toc212082332"></a><!--[if !supportLists]--><span lang="X-NONE">3.2<span style="font-size: 7pt; font-weight: normal;">
</span></span><!--[endif]--><span lang="X-NONE">Test Pre-Requisites</span><span lang="X-NONE"><o:p></o:p></span></span></h2>
<h3>
<span style="font-family: Arial, Helvetica, sans-serif;"><!--[if !supportLists]-->3.2.1<span style="font-size: 7pt; font-weight: normal;">
</span><!--[endif]-->Login Accounts<o:p></o:p></span></h3>
<div class="MsoNormal">
<span style="font-family: Arial, Helvetica, sans-serif;">The system administrator will be given full unrestricted
access to the system to enable configuration of user roles during testing.<o:p></o:p></span><br />
<span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></div>
<h3>
<span style="font-family: Arial, Helvetica, sans-serif;"><!--[if !supportLists]-->3.2.2<span style="font-size: 7pt; font-weight: normal;">
</span><!--[endif]-->Data<o:p></o:p></span></h3>
<div class="MsoNormal">
<span style="font-family: Arial, Helvetica, sans-serif;">Test data is as follows:<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpFirst" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – DICOM T1 Weighted
Structural Images (196 image series)<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI T1 Weighted
Structural *T1_n.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI T1 Weighted Structural
*T1_n_r.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI T1 Weighted
Structural *T1_n_r_brain.nii file<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – DICOM Diffusion Tensor
Images (4235 image series)<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI.nii_bvals<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI.nii_bvecs<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_nodif.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_nodif_brain_mask.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc.nii_ecclog<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_FA.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_L1.nii<o:p></o:p></span></div>
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<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_L2.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_L3.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_MD.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_MO.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_S0.nii<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_V1.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_V2.nii<o:p></o:p></span></div>
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</span><!--[endif]-->Youth Mental Health – NifTI Diffusion Tensor
Images *DTI_ecc_tens_V3.ni<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpMiddle" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – DICOM T2 Weighted
Functional MR Images (5460 image series)<o:p></o:p></span></div>
<div class="MsoListParagraphCxSpLast" style="mso-list: l3 level1 lfo8; text-indent: -18.0pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;">·<span style="font-size: 7pt;">
</span><!--[endif]-->Youth Mental Health – Folder of files *FMR.ica<o:p></o:p></span><br />
<span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></div>
<h3>
<span style="font-family: Arial, Helvetica, sans-serif;"><!--[if !supportLists]-->3.2.3<span style="font-size: 7pt; font-weight: normal;">
</span><!--[endif]-->Role permissions<o:p></o:p></span></h3>
<div class="MsoNormal">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc212082334"></a><a href="https://www.blogger.com/null" name="_Toc130355544"></a><b><span lang="EN-US">project-administrator</span></b><span lang="EN-US"> : user is allowed to administer the specific
<b>Project</b><span style="color: #878787;"><o:p></o:p></span></span></span></div>
<div class="MsoNormal">
<span style="font-family: Arial, Helvetica, sans-serif;"><b><span lang="EN-US">subject-administrator</span></b><span lang="EN-US"> : (pssd.project.subject.admin.<CID>)</span><span lang="EN-US"> : user is allowed to administer <b>Subjects</b>
in the specific project<span style="color: #878787;"><o:p></o:p></span></span></span></div>
<div class="MsoNormal">
<span style="font-family: Arial, Helvetica, sans-serif;"><b><span lang="EN-US">member</span></b><span lang="EN-US"> : user is a member (no admin and cannot see
private meta-data on <b>Subjects</b>) of the specific <b>Project</b><span style="color: #878787;"><o:p></o:p></span></span></span><br />
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-US"><b><br /></b></span></span></div>
<div class="MsoNormal">
<span lang="EN-US"><span style="font-family: Arial, Helvetica, sans-serif;">These
roles are hierarchical; the project admin role contains the subject admin role
contains the member role contains the guest role.<o:p></o:p></span></span></div>
<div class="MsoNormal">
<span lang="EN-US"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span></div>
<div class="MsoNormal">
<br /></div>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">Prior to the
execution of test cases, and on completion of development, a demonstration of
the new application/system should be arranged. This meeting should be between
the Developers, Project Manager, Test Team and User Acceptance Testers. <o:p></o:p></span></span></div>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">This
education session should allow the testers to understand the application/system
they are testing prior to the commencement of the actual Test Phase.<o:p></o:p></span></span></div>
<div class="Normal1">
<br /></div>
<h2 style="margin: 12pt 0cm 12pt 28.9pt; text-indent: -28.9pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308647"></a><a href="https://www.blogger.com/null" name="_Toc212082307"></a><!--[if !supportLists]--><span lang="X-NONE">3.3<span style="font-size: 7pt; font-weight: normal;">
</span></span><!--[endif]--><span lang="X-NONE">UAT Entry Criteria</span><span lang="X-NONE"><o:p></o:p></span></span></h2>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">UAT will commence if ALL the following criteria are met:<o:p></o:p></span></span></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0.0001pt 18pt; text-indent: -18pt;">
<!--[if !supportLists]--><span style="font-family: Arial, Helvetica, sans-serif;"><span style="font-size: 8pt;">·<span style="font-size: 7pt;">
</span></span><!--[endif]-->System
Testing has been completed and ;</span></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0.0001pt 18pt; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif; font-size: 7pt; text-indent: -18pt;"> </span><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">No high
severity or impact faults remain post system testing.</span></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0.0001pt 54pt; text-indent: -18pt;">
</div>
<ul>
<li><span style="font-family: Arial, Helvetica, sans-serif; font-size: 7pt; text-indent: -18pt;"> </span><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Any
medium/low severity or impact faults have agreed actions which will be resolved
in a manner which will not impact User Acceptance testing.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Requirements/High
Level Design or other relevant documents have been generated.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Sign-off
of this Test Strategy has been completed by Project Team and Business
Representatives.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Test
Plan document which will include test cases has been completed, reviewed and signed
off by the Project Manage.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Test
environment has been successfully setup.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Any
login accounts, required to complete User Acceptance testing, have been created</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">All
testing tools and resources have been made available to relevant parties prior
to commencement.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">All
training required has been provided to the Business Representatives team who
will be testing new/modified systems.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Data,
required to complete User Acceptance testing, has been migrated into the Test
Environment.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Change
Management methodologies in place and adhered to.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Tracking
method/software in place and working, to monitor fault/issue tracking and
resolution.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Access
to development resources and personnel for issue resolution.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Access
to Business Representative when required</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Infrastructure
support in place.</span></li>
</ul>
<!--[if !supportLists]--><br />
<h2 style="margin: 12pt 0cm 12pt 28.9pt; text-indent: -28.9pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308648"></a><a href="https://www.blogger.com/null" name="_Toc212082308"></a><!--[if !supportLists]--><span lang="X-NONE">3.4<span style="font-size: 7pt; font-weight: normal;">
</span></span><!--[endif]--><span lang="X-NONE">UAT Exit Criteria</span><span lang="X-NONE"><o:p></o:p></span></span></h2>
<div class="Normal1">
</div>
<ul>
<li><span style="font-family: Arial, Helvetica, sans-serif;">UAT will be
signed off if ALL the following criteria are met:</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -17.85pt;">All UAT test
cases are executed</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -17.85pt;">All
incidents identified during execution are logged</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -17.85pt;">No Critical,
High or Medium Severity errors remain open</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -17.85pt;">Outstanding
Low Severity errors scheduled for resolution</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Business has
provided a work around, for any outstanding issue(s) and has signed off on the
release to UAT.</span></li>
<li><span style="font-family: Arial, Helvetica, sans-serif; text-indent: -18pt;">Test
Completion Report completed and distributed to all relevant team members.</span></li>
</ul>
<br />
<div class="Normal1" style="margin-bottom: 3.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 3.0pt;">
<br /></div>
<h2 style="margin: 12pt 0cm 12pt 28.9pt; text-indent: -28.9pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308649"></a><a href="https://www.blogger.com/null" name="_Toc212082309"></a><!--[if !supportLists]--><span lang="X-NONE">3.5<span style="font-size: 7pt; font-weight: normal;">
</span></span><!--[endif]--><span lang="X-NONE">Sign off Procedures</span><span lang="X-NONE"><o:p></o:p></span></span></h2>
<h3 style="mso-list: none; tab-stops: 36.0pt; text-indent: 0cm;">
<span style="font-family: Arial, Helvetica, sans-serif;"><a href="https://www.blogger.com/null" name="_Toc241308650"></a><a href="https://www.blogger.com/null" name="_Toc212082310"></a>UAT
Sign Off Procedures<o:p></o:p></span></h3>
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">Upon
completion of the UAT by all participating business units, the business
representative from each business unit is responsible for completing and
signing (if all test exit criteria are met) the Test Completion Report). This
is to signify that the solution has been verified with respect to the business
processes of their business unit and the new solution has been accepted.<o:p></o:p></span></span></div>
<br />
<div class="Normal1">
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;">Upon
signing off on the UAT by all business units, all Test Completion Reports will
be submitted to the Project Manager and used as a basis for their final
endorsement on the overall solution.
Also the tested components will be released to Production environment
via the Change Management Process.</span></span><span lang="EN-GB" style="font-family: "Calibri","sans-serif"; mso-ascii-theme-font: minor-latin; mso-hansi-theme-font: minor-latin;"><o:p></o:p></span><br />
<span lang="EN-GB"><span style="font-family: Arial, Helvetica, sans-serif;"><br /></span></span>
<span lang="EN-GB"></span><br />
<div class="MsoNormal" style="line-height: 13.5pt; margin-bottom: 15.0pt; margin-left: 0cm; margin-right: 0cm; margin-top: 15.0pt;">
<span style="font-family: "Helvetica","sans-serif"; font-size: 10.0pt; mso-bidi-font-family: Helvetica; mso-fareast-font-family: "Times New Roman"; mso-fareast-language: EN-AU;">Posted by Neal
Anderson May 14th, 2014<o:p></o:p></span></div>
</div>
Anonymoushttp://www.blogger.com/profile/17933109672510100579noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-6618492782749220812013-02-11T15:38:00.000-08:002013-02-17T15:48:22.098-08:00<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<h2 class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="color: #444444;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="font-size: small;">
</span><span style="font-size: large;"><span lang="EN-AU"><span style="color: black;">Target Customers<o:p></o:p></span></span></span></span></span></h2>
<h2>
<span style="color: #444444;">
<span style="font-family: Arial, Helvetica, sans-serif; font-size: small;"></span> </span></h2>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 10pt;">
<span lang="EN-AU"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Potentially new insights gained into the
clinical research problems through integrated data and larger and more able to
be analysed multi-model data sets. Ability to build larger data sets from
otherwise discrete projects based on standardised scans (e.g. structural) and
standard neuropsychological tests (e.g. CANTAB), generating new research data
sets not currently available. The project brings the potential benefit of
providing additional information to referring clinicians that may assist with
clinical care. </span><i><br /><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">
<br />
</span></i><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The MRI, PET and recently developed High Performance Computing Platform
(and the associated molecular imaging capability which includes the flagship
research cyclotron) are also associated with the National Imaging Facility
(NIF). 10 per cent of instrument time is assigned for access by NIF
researchers.</span></span><br />
</div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt; text-align: justify;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">During the first round of the project, professor Jim Lagopoulos
from Brain and Mind Research Institute will be the main customer who will use
the system to upload/download images and records, query images and records, pre
– process images, link records, manage permissions, advertise
publications.<span style="mso-spacerun: yes;"> </span>The automated system will
save the professor tones of valuable time and simplify the process to share,
manage and analyse research records. </span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">In the system the user groups will be divided into two major parts,
one uses the system and another manages the system. Therefore one of our key
customer groups are BMRI researchers (including students) and another key user
group are admin users who look after the access and metadata in the system. </span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU"><span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;">This project will result in human brain scan data (structural and
functional) and numerous associated Neuropsychological and<span style="mso-spacerun: yes;"> E</span>lectrophysiological tests being integrated
to produce an analysis resource that will help in the study of brain function /
human behaviour and advance research that allows improved diagnosis and
treatment of diseases.<span style="mso-spacerun: yes;"> </span>It will be
relevant to a range of government portfolios, including Health and Ageing
and Innovation, Industry, Science and Research.<i><o:p></o:p></i></span></span></span></div>
Anonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-21419050036692462802013-02-11T15:37:00.004-08:002014-05-27T21:05:05.559-07:00<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<h2 class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="color: #444444;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="font-size: small;">
</span><span style="font-size: large;"><span lang="EN-AU"><span style="color: black;">Key success factors<o:p></o:p></span></span></span></span></span></h2>
<h2>
<span style="color: #444444;">
</span></h2>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">One of the main problems in Brain and Mind Research Institute is
that there is no such a tool the can efficiently and effectively collaborate
the data captured from multiple test.<span style="mso-spacerun: yes;">
</span>The researchers need to put the data and the images together manually in
order to perform analysis.<span style="mso-spacerun: yes;"> </span>Another is
the pre – processing of the MRI images. In order to read the image, research
needs to pre – process the raw image from the scanner. Professor Jim Lagopoulos
spends hours and hours a week just on helping the pre- processing because he is
the only person who has the expertise to do it quickly.</span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">These manual processes consume significant time and effort,
replacing these by an automated process will be a huge success in the research
area.</span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The system will improve the process efficiency by replacing the
manual pre – processing to an automated pre- processing based on the
researcher’s requirement. <span style="mso-spacerun: yes;"> </span>Moreover,
system integrates multiple sources of records and presents the summery of
linked records according to user’s query, giving the user an overall view of
related records. This automated functionality is previously not existed in this
research filed of BMRI the University of Sydney. </span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The new process and functionality that will be brought by the
application is highly welcomed by the researchers in BMRI, users keen to have
an application that</span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpFirst" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Can integrate, manage and store
a diverse range of clinical research data. </span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Can run MRI Scan pre-process
through the process</span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Can ingest existing research
data</span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Can enable users to manage
access to research data. </span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Can allow user to define and
queries on research data.</span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpLast" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Can provide RIF-CS 1.3,
Service, Party, Input Collection and Output Collection records to Research Data
Australia.</span></span></span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">In the mean while the system shall also:</span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpFirst" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Meets ICT’s security standards.</span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpLast" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l0 level1 lfo1; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">-<span style="font-family: "Times New Roman"; font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Meets minimum accessibility
requirements.</span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
</div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The users will perform and approve completion of the User Acceptance
Testing (UAT) that will prior to the application moving into a production
environment. The users will be sourced from both project team members and where
possible users that are not part of the team except for UAT purposes.</span></div>
Anonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-60385186428585962432013-02-11T15:37:00.002-08:002013-02-17T15:47:14.417-08:00<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<h2 class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="color: #444444;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="font-size: small;">
</span><span style="font-size: large;"><span lang="EN-AU"><span style="color: black;">Project Output & Our
Primary Product<o:p></o:p></span></span></span></span></span></h2>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
</div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Imaging and clinical testing is not limited to neuroscience and
mental health research, but extends to the University's research priority areas
of cardiovascular disease, diabetes and obesity clinical research. As such the
system will be developed to be disease independent and re-deployable for other
systems (this will include the USyd Centre for Obesity, Disease and
Cardiovascular Disease (CODCD) or other research programs as required)<span style="mso-spacerun: yes;"> </span>The system will be designed to be able to be
redeployed to other sites outside the University of Sydney.<span style="mso-spacerun: yes;"> </span>The source code will be documented and
packaged within either Google Code or SourceForge, enabling download and
installation elsewhere. During the project we will communicate our developments
and progress with other Universities with a view gauging interest in
redeployment and collaboration e.g. ANDS Distribution list and other meetings.</span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The project will produce RIF –CS service description and associated
RIF-CS collection description, along with related party and activity
descriptions where relevant. The data collection described and fed to Research
Data Australia will have data accessible for re-use, via a form of public /
mediated access. This enables the research data to be searchable.</span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">A high level document illustrating the overall design of the
software system including instruments, data sources, users, and location of
information will be presented.<span style="mso-spacerun: yes;"> </span>Training
manual and software specification will be written for the purpose of user
training. </span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The team will deposit the open source of the software in Google Code
or Source Forge, accompanied by developer manuals to facilitate re-use. </span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Currently the application/developer is still under selection, the
team is evaluating the options against the selection criteria. </span></div>
Anonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.com0tag:blogger.com,1999:blog-6809442391044357295.post-37477712085307940022013-02-11T15:36:00.001-08:002013-03-11T17:47:48.681-07:00<h2>
<span style="color: #444444;">
<span style="font-family: Arial, Helvetica, sans-serif; font-size: small;">
<span style="color: black; font-size: large;">Key Technologies & Key Features</span></span></span></h2>
<span style="color: #444444;"></span><br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span> </div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span> </div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;">The Univerisity of Sydney has chosen <strong>Daris</strong> as the solution software. The sofware sits on MediaFlux's server and provides functions required by University of Sydney researchers. </span></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial;"></span> </div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial;">The key functions required that Daris will be able to produces are: </span></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial;"></span> </div>
<ul>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;"><span style="font-family: Arial, Helvetica, sans-serif;">Storage of MRI data<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Storage of Neuropsychological data<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Enable uses to manage access to specific data sets<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Enable users to describe research data collections<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Enable users to query the systems research data collection<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Enable users to download research data<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Enable the visualisation of research data<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Make available RIF-CS 1.4 metadata available for harvesting via OAI-PMH.<o:p></o:p></span></span></div>
</li>
<li><div class="MsoNormal" style="margin: 0cm 0cm 0pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-size: 9.5pt;">Enable the creation of output collections</span></span><span style="color: #444444;"></span></div>
<span style="color: #444444;"></span></li>
<span style="color: #444444;"></span></ul>
<span style="color: #444444;"></span><div>
<span style="font-family: Arial, Helvetica, sans-serif;"></span> </div>
<div class="MsoNormal" style="margin: 6pt 0cm; mso-layout-grid-align: none; mso-pagination: none; text-align: left;">
<span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;"><span style="font-family: Arial, Helvetica, sans-serif;">The solution components are broken down into
the following:<o:p></o:p></span></span></div>
<ul>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;">
</span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">Access control for authentication and authorization purposes. </span></span></div>
</li>
<div style="text-align: left;">
</div>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">Admin functionality is controlled by roles based permissions. Functional permissions management is a permissions controlled function that allows users to grant and revoke data access and to manage user roles.</span></span></div>
</li>
</ul>
<ul>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">Other function is to implement business functions. For example building form that allows users to add and update Nuerophsycohological data.</span></span></div>
</li>
<div style="text-align: left;">
</div>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">Reporting is a permissions controlled function that packages, compresses and makes datasets available for download by authenticated users.</span></span></div>
</li>
<div style="text-align: left;">
</div>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">File system storage<span style="mso-spacerun: yes;"> </span>will store the pre-processed data and its extended information like index. </span></span></div>
</li>
</ul>
<ul>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">Relational database will be use for system management configuration or user management information only.</span></span></div>
</li>
</ul>
<ul>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">Email Connector is the components that send appropriate emails to application users.</span></span></div>
</li>
<div style="text-align: left;">
</div>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">The OAI harvester makes RIF-CS 1.4 compliant metadata records .xml files public available for harvest Research Data Australia is a RIF-CS 1.4 .xml harvester.</span></span></div>
</li>
<div style="text-align: left;">
</div>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-ansi-language: EN-US; mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-language: EN-US; mso-hansi-font-family: Calibri;">WASM connector is to integrate with the University of Sydney authentication system<o:p></o:p></span></span></div>
</li>
</ul>
<div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;">
</span><span lang="EN-AU"><span style="font-family: Arial, Helvetica, sans-serif;"></span></span></div>
<div style="text-align: left;">
<span lang="EN-AU"><span style="font-family: Arial, Helvetica, sans-serif;"></span></span> </div>
<div style="text-align: left;">
<span lang="EN-AU"><span style="font-family: Arial, Helvetica, sans-serif;"></span></span> </div>
<div style="text-align: left;">
<span lang="EN-AU"><span style="font-family: Arial, Helvetica, sans-serif;">The BMRI solution consists of the
components listed below and its integration purpose:</span></span></div>
<ul>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;">
</span><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU">WASM provides authentication of users and provides basic user information for tracking relations between parties (users) and collections (datasets). Actual relation ship types are tracked through the BMRI Application.</span></span></div>
</li>
</ul>
<ul>
<li><div style="text-align: left;">
<span style="font-family: Arial, Helvetica, sans-serif;"></span><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU">Research Data Australia connects to the BMRI JOAI harvester via OAI-PMH protocol to ingest updated information from the BMRI harvest point.</span></span></div>
</li>
</ul>
<br />
<div class="MsoNormal" style="margin: 0cm 0cm 0pt 36pt;">
</div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt 36pt;">
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<span style="color: #444444; font-family: Arial;"></span><br /></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt 36pt;">
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<span style="clear: left; color: #444444; float: left; font-family: Arial, Helvetica, sans-serif; margin-bottom: 1em; margin-right: 1em;"><img border="0" height="401" src="http://3.bp.blogspot.com/-nlUAy0r7oLk/URmARxtmGwI/AAAAAAAAAAk/QFG-_UTB-ew/s640/Capture.PNG" width="640" /></span></div>
<div class="MsoNormal" style="margin: 0cm 0cm 0pt 36pt;">
</div>
<span style="color: #444444;"></span><br />Anonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.com4tag:blogger.com,1999:blog-6809442391044357295.post-53492984723976082842013-02-11T15:25:00.000-08:002013-03-11T17:20:04.055-07:00<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: black; font-family: Arial, Helvetica, sans-serif; font-size: xx-small; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"><span style="font-family: Arial, Helvetica, sans-serif; font-size: large;">Product Team</span></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;">Daris - The University of Melbourne</span></b><br />
<strong><span style="font-family: Arial, Helvetica, sans-serif;"></span></strong><br />
<strong><span style="font-family: Arial, Helvetica, sans-serif;"></span></strong><br />
<strong><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Dr Neil Kileen</span></strong><br />
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Information Technology, Centre for Neuroscience Research</span><br />
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<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Dr Neil recieved 1st class honour degree of Bechalor of Science in 1979 at Adelaide University and completed his PhD in The Asutralian National University in 1984. Dr Neil's investigation on Australian virtual observatory - Populated from Themis conversion( Linkage Infrasturcture( Equipment and Faculties)) awarded by AUST RESEARCH COUNCIL in 2005.</span><br />
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<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Dr Neil now supports the project solution application - Daris in The University of Melbourne, and is the key product team member. </span><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;">The University of Sydney</span></b><br />
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<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span></span></b><br />
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="line-height: 115%; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;">Jim
Lagopoulos<o:p></o:p></span></span></span></b><br />
<span lang="EN-AU" style="mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;">Associate
Professor <o:p></o:p></span></span></span><br />
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<span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Jim’s research focus lies in the area of Neuroimaging. Of particular
interest is the interaction between prefrontal cortex and subcortical
substrates in the regulation of emotion and how these networks are specialised
for the detection of behaviourally relevant stimuli. In the area of neurophysiology,
Jim have focussed on intraoperative techniques including electrocorticography
in the planning of epilepsy surgery as well as techniques for mapping brain
function during surgery for the resection of brain and spinal cord tumours. </span></span></div>
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<span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">For more details, please visit the website below:</span></span></div>
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<span lang="EN-AU"><a href="http://sydney.edu.au/medicine/people/academics/publications/jlagopoulos.php"><span lang="EN-US" style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">http://sydney.edu.au/medicine/people/academics/publications/jlagopoulos.php</span></span></a></span><span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><o:p></o:p></span></div>
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<b style="mso-bidi-font-weight: normal;"><span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Dr Daniel
Hermens</span></span></b><br />
<span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Senior Research Fellow</span></span></div>
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<span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Medicine, Scholl of Mediacal Sciences Brain & Mind Research
Institute.</span></span></div>
<div class="xcontributor" style="margin: 0cm 0cm 0pt;">
<a href="http://www.blogger.com/null" name="_GoBack"><span class="xcontributorname"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-ascii-theme-font: minor-latin; mso-bidi-theme-font: minor-latin; mso-hansi-theme-font: minor-latin;">Daniel
Hermens</span></span></a><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;"><span style="mso-bookmark: _GoBack;"><span lang="EN-AU" style="mso-ascii-theme-font: minor-latin; mso-bidi-theme-font: minor-latin; mso-hansi-theme-font: minor-latin;"> (PhD) is a
Senior Research Fellow at the Brain & Mind Research Institute, University
of Sydney. He has over 12 years experience as a clinical neurophysiologist and
his research has primarily focused on the neurocognition of young people with
psychiatric disorders (including ADHD, psychosis, bipolar disorder) and, more
recently, the effects of substance misuse.</span></span><span lang="EN-AU" style="mso-ascii-theme-font: minor-latin; mso-bidi-theme-font: minor-latin; mso-hansi-theme-font: minor-latin;"><span style="mso-spacerun: yes;"> </span><o:p></o:p></span></span></span></div>
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<span style="mso-ansi-language: EN-US; mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Daniel’s research utilises neurophysiological measures, such as
event-related potentials, to better understand psychiatric disorders and
substance use in young people. Daniel current interest is in the early stages
of psychosis and bipolar disorder as well as alcohol misuse. Daniel is
incorporating cognitive and neuroimaging measures to further probe the
underlying neurobiology of these disorders.</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;">For
more detail, please visit website below:<o:p></o:p></span></span></span></div>
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<span lang="EN-AU"><a href="http://sydney.edu.au/medicine/people/academics/publications/dhermens.php"><span style="mso-bidi-font-family: Calibri; mso-bidi-theme-font: minor-latin;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">http://sydney.edu.au/medicine/people/academics/publications/dhermens.php</span></span></a></span></div>
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<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="line-height: 115%;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Mr Neal Anderson</span></span></b></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Project Manager </span></span><br />
<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Information Communication and Technology, the
University of Sydney</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Neal has worked in the IT industry since 1999 in a variety of
roles from business analyst programmer, project manager, and currently is the
Programme and project manager for externally funded EResearch projects. </span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;">He has been employed at the University of Sydney since 2007,
originally working on various Human Resources application projects, and has
been involved in several ANDS/NecTAR funded projects since late 2011.<o:p></o:p></span></span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">ANDS projects</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">AP24 – Brain and Mind Research Institute Application</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">DC2C – NSW Tardis node</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">DC2D – Agriculture and Ecology Data Capture</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">DC2F – MyResearchData</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">NeCTAR projects – IT Project Manager</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">NeCTAR Characterisation Virtual Laboratory – Atom Probe</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-family: "Times New Roman"; mso-bidi-theme-font: minor-bidi;"><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;">NeCTAR Virtual Laboratory, Industrial Ecology<o:p></o:p></span></span></span></div>
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<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="line-height: 115%; mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Mr Justin Chang </span></span></b><br />
<span lang="EN-AU" style="mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Business Analyst </span></span><br />
<span lang="EN-AU" style="mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Information Communication and
Technology, the University of Sydney</span></span></div>
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<span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;"><span lang="EN-AU" style="mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";">Justin</span><span class="apple-style-span"><span lang="EN-AU" style="mso-bidi-font-style: italic;"> has worked in the IT industry
since 2006 in a variety of roles from Graphic designer, Web designer, IT
Support, Business Analyst, and currently is the Business Analyst for a range of
externally funded eResearch projects at the university of Sydney.</span></span></span></span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-bidi-font-style: italic;">He has been employed at the University of Sydney since 2011, originally
working on various ICT funded research application projects that cover a range
of disciplines, which include the following:</span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";">FRB - Fight Retinal Blindness</span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";">APSU – Australian Paediatric Surveillance unit</span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";">CeMPED – Centre for Medical and Psychological
Evidence-based Decision-making </span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";">Glycemic index Website and database</span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Justin is currently the Business Analyst for the following ANDS funded
projects:</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">AP24 – Brain and Mind Research Institute Application</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">DC2C – NSW Tardis node</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">DC2D – Agriculture and Ecology Data Capture</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">DC2F – MyResearchData</span></span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif; mso-bidi-font-style: italic; mso-fareast-font-family: "Times New Roman";">DC2B – Sydney Harbour Environmental Data system</span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">MS20 – Metadata Store </span></span></div>
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<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Mr Zhuoyang Chen</span></span></b><br />
<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Business Analyst </span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Information Communication and Technology, the
University of Sydney.</span></span><br />
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Mr Chen has graduated from the University of Sydney and recently
employed by the University to assist on University research projects.<span style="mso-spacerun: yes;"> </span>Previous to this employment, Mr Chen has
worked in many IT and telecommunication engineering industries as an intern,
such as General Electic, Blue Point and Telstra. </span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444;"><span style="font-family: Arial, Helvetica, sans-serif;">Mr Chen also works on other ANDS projects as a business analyst to
develop business process, gather business requirements for business sponsors
and core business users. <o:p></o:p></span></span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The project includes:</span></span></div>
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<span lang="EN-AU" style="mso-bidi-font-style: italic;"><span style="color: #444444; font-family: Arial, Helvetica, sans-serif;">BMRI application – AP24</span></span></div>
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Anonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.com2tag:blogger.com,1999:blog-6809442391044357295.post-13683453138062752402013-02-11T15:20:00.000-08:002013-02-17T15:45:04.551-08:00<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
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</span><span style="font-size: large;"><span style="color: black;">Project Description:<o:p></o:p></span></span></span></span></h2>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Mental health and Neuroscience research programs associated with the
University of Sydney headspace services, and the Healthy Brain Ageing programs
are undertaken at the Brain and Mind Research Institute. The data obtained from
the brain scans and the neuropsychological and electrophysiological tests generates
the research project’s raw data. This raw data is enriched by</span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">contextual information critical for use and reuse. <span style="mso-spacerun: yes;"> </span>Integration of the data result will direct
value to clinicians caring for patients, provide convenience for research to
perform analysis and link records for research reference. </span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">To integrate various (a) imaging, (b)
neurological & electrophysiological testing data and (c) clinical data for
the purpose of providing a refined answer to complex research questions that is
not currently possible using the separately existing (and expanding) data sets
across the clinical research programs at BMRI making use of brain scans. </span></div>
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The project will provide the integration tool for the multiple data
sets and data points within data sets and develop an analytical tool for
interrogating the data in response to specific research questions for example
researchers at the BMRI (Brain Mid Research Institute) I are trying to
establish if there is a characteristic pattern that emerges from our structural
imaging data and a specific electrophysiological component that predicts with
some degree of accuracy a clinical phenotype, such as depression in young
people. </span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The system developed through this project will provide an integrated
research data set to be expanded and used for future research projects. An
additional objective is to integrate contributions to the data set from other
clinical researchers and to make the larger data set available through research
collaborations. </span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">The outcomes of the project will provide data and an analysis
platform for the development of information based diagnostic and treatment
response algorithms for young people with major mental health problems like
depression and psychotic disorders, as well as ageing subjects.</span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">AP24 is aiming to provide a software solution covering the following
functionality:</span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">1.<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Integrate large and sometimes
disparate data sets held in SPSS and provide a platform to enable data
transformation and analysis by authorised parties. </span></span></span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-ascii-font-family: Calibri; mso-bidi-font-family: Calibri; mso-fareast-font-family: Calibri; mso-hansi-font-family: Calibri;"><span style="mso-list: Ignore;">2.<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Provide an analytical tool for
interrogating the data in response to research questions (of the type discussed
above).</span></span></span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">In cases where a research subject is under clinical care, and
research findings may provide additional diagnostic support, provide mechanisms
for communicating findings to the clinician.</span></div>
<b style="mso-bidi-font-weight: normal;"><span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span></b><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Current status</span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Project initiated and contracts
signed - Complete</span></span></span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Business requirements and
processes identified and approved - Complete</span></span></span></div>
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<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l2 level1 lfo3; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Technical requirements
identified - Complete</span></span></span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Identification of possible
solutions - Complete</span></span></span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Evaluation and Selection of
Solutions – In progress</span></span></span></div>
<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;"><o:p></o:p></span><br />
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<span lang="EN-AU" style="color: #444444; font-family: Arial, Helvetica, sans-serif;">Next Steps</span></div>
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<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Select Solution </span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l1 level1 lfo2; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Design and Install
infrastructure for solution implementation </span></span></span></div>
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<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l1 level1 lfo2; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Setup and install software on
test environment </span></span></span></div>
<span style="color: #444444; font-family: Arial, Helvetica, sans-serif;"></span><br />
<div class="MsoListParagraphCxSpMiddle" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l1 level1 lfo2; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">User Acceptance Testing and
approval </span></span></span></div>
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<div class="MsoListParagraphCxSpLast" style="margin: 0cm 0cm 0pt 36pt; mso-add-space: auto; mso-list: l1 level1 lfo2; text-indent: -18pt;">
<span style="font-family: Arial, Helvetica, sans-serif;"><span style="color: #444444;"><span lang="EN-AU" style="mso-bidi-font-family: Symbol; mso-fareast-font-family: Symbol;"><span style="mso-list: Ignore;">·<span style="font-size-adjust: none; font-stretch: normal; font-style: normal; font-variant: normal; font-weight: normal; line-height: normal;">
</span></span></span><span lang="EN-AU">Production implementation,
testing, and Go-live </span></span></span></div>
Anonymoushttp://www.blogger.com/profile/11963566974166359654noreply@blogger.com0